Raven-assembler¶
Introduction¶
Raven-assembler
is a de novo genome assembler for long uncorrected reads.
For more information, please check its website: https://biocontainers.pro/tools/raven-assembler and its home page on Github.
Versions¶
1.8.1
Commands¶
raven
Module¶
You can load the modules by:
module load biocontainers
module load raven-assembler
Example job¶
Warning
Using #!/bin/sh -l
as shebang in the slurm job script will cause the failure of some biocontainer modules. Please use #!/bin/bash
instead.
To run Raven-assembler on our clusters:
#!/bin/bash
#SBATCH -A myallocation # Allocation name
#SBATCH -t 1:00:00
#SBATCH -N 1
#SBATCH -n 12
#SBATCH --job-name=raven-assembler
#SBATCH --mail-type=FAIL,BEGIN,END
#SBATCH --error=%x-%J-%u.err
#SBATCH --output=%x-%J-%u.out
module --force purge
ml biocontainers raven-assembler
raven -t 12 input.fastq