Intarna¶
Introduction¶
Intarna
is a general and fast approach to the prediction of RNA-RNA interactions incorporating both the accessibility of interacting sites as well as the existence of a user-definable seed interaction.
For more information, please check its website: https://biocontainers.pro/tools/intarna and its home page on Github.
Versions¶
3.3.1
Commands¶
IntaRNA
Module¶
You can load the modules by:
module load biocontainers
module load intarna
Example job¶
Warning
Using #!/bin/sh -l
as shebang in the slurm job script will cause the failure of some biocontainer modules. Please use #!/bin/bash
instead.
To run Intarna on our clusters:
#!/bin/bash
#SBATCH -A myallocation # Allocation name
#SBATCH -t 1:00:00
#SBATCH -N 1
#SBATCH -n 1
#SBATCH --job-name=intarna
#SBATCH --mail-type=FAIL,BEGIN,END
#SBATCH --error=%x-%J-%u.err
#SBATCH --output=%x-%J-%u.out
module --force purge
ml biocontainers intarna
IntaRNA -t CCCCCCCCGGGGGGGGGGGGGG -q AAAACCCCCCCUUUU