R¶
Introduction¶
R
is a system for statistical computation and graphics.
This is a plain R-base installation (see https://github.com/rocker-org/rocker/) repackaged by RCAC with an addition of a handful prerequisite libraries (libcurl, libopenssl, libxml2, libcairo2 and libXt) and their header files.
For more information, please check its | Docker hub: https://hub.docker.com/_/r-base and its home page: https://www.r-project.org/.
Versions¶
4.1.1
Commands¶
R
Rscript
Module¶
You can load the modules by:
module load biocontainers
module load r
Example job¶
Warning
Using #!/bin/sh -l
as shebang in the slurm job script will cause the failure of some biocontainer modules. Please use #!/bin/bash
instead.
To run R on our clusters:
#!/bin/bash
#SBATCH -A myallocation # Allocation name
#SBATCH -t 1:00:00
#SBATCH -N 1
#SBATCH -n 1
#SBATCH --job-name=r
#SBATCH --mail-type=FAIL,BEGIN,END
#SBATCH --error=%x-%J-%u.err
#SBATCH --output=%x-%J-%u.out
module --force purge
ml biocontainers r