Mcl¶
Introduction¶
Mcl
is short for the Markov Cluster Algorithm, a fast and scalable unsupervised cluster algorithm for graphs.
For more information, please check its website: https://biocontainers.pro/tools/mcl and its home page: http://micans.org/mcl/.
Versions¶
14.137-pl5262
Commands¶
clm
clmformat
clxdo
mcl
mclblastline
mclcm
mclpipeline
mcx
mcxarray
mcxassemble
mcxdeblast
mcxdump
mcxi
mcxload
mcxmap
mcxrand
mcxsubs
Module¶
You can load the modules by:
module load biocontainers
module load mcl
Example job¶
Warning
Using #!/bin/sh -l
as shebang in the slurm job script will cause the failure of some biocontainer modules. Please use #!/bin/bash
instead.
To run Mcl on our clusters:
#!/bin/bash
#SBATCH -A myallocation # Allocation name
#SBATCH -t 1:00:00
#SBATCH -N 1
#SBATCH -n 1
#SBATCH --job-name=mcl
#SBATCH --mail-type=FAIL,BEGIN,END
#SBATCH --error=%x-%J-%u.err
#SBATCH --output=%x-%J-%u.out
module --force purge
ml biocontainers mcl