Lastz¶
Introduction¶
LASTZ - pairwise DNA sequence aligner
For more information, please check:
BioContainers: https://biocontainers.pro/tools/lastz
Home page: https://github.com/lastz/lastz
Versions¶
1.04.15
Commands¶
lastz
lastz_32
lastz_D
Module¶
You can load the modules by:
module load biocontainers
module load lastz
Example job¶
Warning
Using #!/bin/sh -l
as shebang in the slurm job script will cause the failure of some biocontainer modules. Please use #!/bin/bash
instead.
To run lastz on our clusters:
#!/bin/bash
#SBATCH -A myallocation # Allocation name
#SBATCH -t 1:00:00
#SBATCH -N 1
#SBATCH -n 1
#SBATCH --job-name=lastz
#SBATCH --mail-type=FAIL,BEGIN,END
#SBATCH --error=%x-%J-%u.err
#SBATCH --output=%x-%J-%u.out
module --force purge
ml biocontainers lastz
lastz cmc_CFBP8216.fasta cmp_LPPA982.fasta \
--notransition --step=20 --nogapped \
--format=maf > cmc_vs_cmp.maf