Last¶
Introduction¶
Last
is used to find & align related regions of sequences.
For more information, please check its website: https://biocontainers.pro/tools/last and its home page on Gitlab.
Versions¶
1268
1356
1411
1418
Commands¶
last-dotplot
last-map-probs
last-merge-batches
last-pair-probs
last-postmask
last-split
last-split5
last-train
lastal
lastal5
lastdb
lastdb5
Module¶
You can load the modules by:
module load biocontainers
module load last
Example job¶
Warning
Using #!/bin/sh -l
as shebang in the slurm job script will cause the failure of some biocontainer modules. Please use #!/bin/bash
instead.
To run Last on our clusters:
#!/bin/bash
#SBATCH -A myallocation # Allocation name
#SBATCH -t 1:00:00
#SBATCH -N 1
#SBATCH -n 1
#SBATCH --job-name=last
#SBATCH --mail-type=FAIL,BEGIN,END
#SBATCH --error=%x-%J-%u.err
#SBATCH --output=%x-%J-%u.out
module --force purge
ml biocontainers last
lastdb humdb humanMito.fa
lastal humdb fuguMito.fa > myalns.maf