Assembly-stats¶
Introduction¶
Assembly-stats
is a tool to get assembly statistics from FASTA and FASTQ files.
For more information, please check its website: https://biocontainers.pro/tools/assembly-stats and its home page on Github.
Versions¶
1.0.1
Commands¶
assembly-stats
Module¶
You can load the modules by:
module load biocontainers
module load assembly-stats
Example job¶
Warning
Using #!/bin/sh -l
as shebang in the slurm job script will cause the failure of some biocontainer modules. Please use #!/bin/bash
instead.
To run Assembly-stats on our our clusters:
#!/bin/bash
#SBATCH -A myallocation # Allocation name
#SBATCH -t 00:10:00
#SBATCH -N 1
#SBATCH -n 1
#SBATCH --job-name=assembly-stats
#SBATCH --mail-type=FAIL,BEGIN,END
#SBATCH --error=%x-%J-%u.err
#SBATCH --output=%x-%J-%u.out
module --force purge
ml biocontainers assembly-stats
assembly-stats seq.fasta