Pasta¶
Introduction¶
PASTA: Ultra-Large Multiple Sequence Alignment for Nucleotide and Amino-Acid Sequences.
For more information, please check:
BioContainers: https://biocontainers.pro/tools/pasta
Home page: https://github.com/smirarab/pasta
Versions¶
1.8.7
Commands¶
run_pasta.py
run_seqtools.py
sumlabels.py
sumtrees.py
Module¶
You can load the modules by:
module load biocontainers
module load pasta
Example job¶
Warning
Using #!/bin/sh -l
as shebang in the slurm job script will cause the failure of some biocontainer modules. Please use #!/bin/bash
instead.
To run pasta on our clusters:
#!/bin/bash
#SBATCH -A myallocation # Allocation name
#SBATCH -t 1:00:00
#SBATCH -N 1
#SBATCH -n 1
#SBATCH --job-name=pasta
#SBATCH --mail-type=FAIL,BEGIN,END
#SBATCH --error=%x-%J-%u.err
#SBATCH --output=%x-%J-%u.out
module --force purge
ml biocontainers pasta